Converting SRA to FASTq and FASTA formats

The Sequence Read Archive (SRA) is an entirely new resource at NCBI. It is being designed specifically meet the challenges presented by massively parallel sequencing technologies.

Website: http://eutils.ncbi.nih.gov/Traces/sra/?view=software

Installation

$sudo apt-get install sra-toolkit

Convert SRA to FASTQ file

$fastq-dump -M 25 -A file.SRA

 

Processing parameters

-M, filter by sequence length

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